Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015802646.1_cds_XP_016480443.1_7151
CDS Infomation

[gene=LOC107801588] [db_xref=GeneID:107801588] [protein=probable cyclic nucleotide-gated ion channel 5] [protein_id=XP_016480443.1] [location=complement(join(112820..113515,113637..113873,114058..114169,114679..114986,115954..116166,116324..116839))] [gbkey=CDS]
Sequence

ATGGAAGCTTTTAGACGTTCTGGCCATGCAACTAACAGCCCGTCAAGGTCTTTTAAGAGA
GGAATGAGAAAAGGGTCGGAAGGACTCAAGTCTATTGGTCGATCACTCGGTTTTGGTGTC
TCTAAGGCAGTATTTCCTGAAGATCTGAAAGTTTCAGAGAATAAGATTTTTGATCCTCAA
GATAAATTCCTTCTCTTGTGGAATAAGCTCTTTGTTGTATCATGCATTCTGGCGGTATCT
GTGGATCCACTGTTCTTCTACCTTCCAGTTTTTAATAACACGGCAAATTGCCTTCAGATT
GATCGAAAGCTAGCTGTTATAGCCACTACACTACGTACCATTGTTGATGCTTTCTATCTT
ATTCACATAGCACTTCAGTTTCGTACAGCTTATATTGCGCCATCATCTCGCGTTTTTGGA
CGGGGTGAACTTGTGATAGATTCTGGACAGATTGCTAAAAGATACTTGCGGTTCTATTTC
ATCATCGATCTTCTTTCTGTGCTTCCCTTGCCTCAGATTGTAGTTGGGAGATTCCTGCAG
AGATCAGCAGGTTCTGATGTACTCGCTACCAAACAAGCTTTGCTCTATATCATTTTGCTT
CAGTATATCCCCAGATTTGCTCGAGTTATACCCTTAACTGCAGAGTTGAAAAGAACTACT
GGTGTCTTTGCTGAAACTGCATGGGCTGGCGCTGCATCCTATTTGCTGTTATACATGCTT
GCTAGTCACATAGTTGGTTCCTTTTGGTATTTGCTTTCTGTGGAACGCTATGATACATGC
TGGCAAGAAGCTTGTAAACATAATGGAACATGCAACCCCGATTTCTTGTACTGTGGCAAT
CAAGGAATGACAGGGTATAATGCTTGGAGCAGTATCAGTGAGTCGGTTTTAAATGAAGCA
TGCCCCGTAGATAGTGACAACGACCGACCATTTGATTTTGGAATTTTTAAGCAGGCTTTG
TCATCTGGCATAGTTTTCTCGATGAAGTTCGTGACTAAATATTGCTACTGTTTGTGGTGG
GGACTCCAGAATTTGAGTACCCTTGGACAGGGACTTCAAACTAGCACGTTTCCCGGGGAG
TCTCTTTTCTCTATTGCACTTGCAATACTCGGGCTCATTCTCTTTGCACTGTTGATTGGT
AACATGCAGACATACCTTCAGTCTCTTACTATTCGACTTGAGGAGATGAGAGTTAAAAGG
CGCGACTCAGAACAGTGGATGCATCACCGATTGCTTCCACAAGATCTCCGAGAACGGGTT
AGGGGCTATGATCAGTACAAGTGGCAAGAAACACGCGGAGTGGATGAAGAGAATATAGTT
CAGAATTTGCCTAAGGATCTCAGGAGGGATATTAAGCGTCATCTTTGTCTGGCTCTAGTG
AAGAGGGTGCCTCTATTTGCAAATATGGAGGAAAGATTGCTCGATGCAATTTGTGAGCGT
CTAAAACCCTGTTTGTACATCGAGAATACTTACCTTGTTCGAGAAGGAGATCCAGTGGAT
GAAATGCTCTTTGTCATACGAGGTCGCCTTGAGAGTGTGACAACTGATGGTGGGCGAAGC
GGTTTCTTCAACCGAAGTTTGTTGAAAGAATCCGACTTTTGTGGAGAGGAACTTCTAACC
TGGGCACTAGACCCAAAATCAGGTTCTAACCTCCCGTCTTCTACTCGTACAGTGAAAGCT
CTAACAGAAGTAGAGGCTTTTGCTCTAATAGCAGATGAGTTGAAATTTGTTGCGAGTCAG
TTCAGAAAGCTTCACAGTAGACAGGTTCAGCACACGTTCCGGTTTTACTCACAACATTGG
AGGACTTGGGCTGCTTGCTTTATCCAAGCAGCGTGGAGGCGTTTCACGAAAAGGAAACTT
ATGGAACTTCAAAGAAAAGAAGACGAAGAAGCAGAAGCGTTGGCCGGGGCTAGTAGCACT
CCGGGTGGATCGCCTTATAGTATTCGTGCAACATTCTTGGCATCAAGATTTGCAGCTAAT
GCTCTCCGAGGGGTTCACAGGAATCGAAATCTTAAGACTGCTAGGGAACTGATGAAGCTG
CAAAAACCTCCAGAGCCTGATTTCAGTGAAGATACTGAGTGA

Peptide Sequence

PEP ID

XP_016480443.1
PEP Infomation

PREDICTED: probable cyclic nucleotide-gated ion channel 5 [Nicotiana tabacum]
Sequence

MEAFRRSGHATNSPSRSFKRGMRKGSEGLKSIGRSLGFGVSKAVFPEDLKVSENKIFDPQ
DKFLLLWNKLFVVSCILAVSVDPLFFYLPVFNNTANCLQIDRKLAVIATTLRTIVDAFYL
IHIALQFRTAYIAPSSRVFGRGELVIDSGQIAKRYLRFYFIIDLLSVLPLPQIVVGRFLQ
RSAGSDVLATKQALLYIILLQYIPRFARVIPLTAELKRTTGVFAETAWAGAASYLLLYML
ASHIVGSFWYLLSVERYDTCWQEACKHNGTCNPDFLYCGNQGMTGYNAWSSISESVLNEA
CPVDSDNDRPFDFGIFKQALSSGIVFSMKFVTKYCYCLWWGLQNLSTLGQGLQTSTFPGE
SLFSIALAILGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQDLRERV
RGYDQYKWQETRGVDEENIVQNLPKDLRRDIKRHLCLALVKRVPLFANMEERLLDAICER
LKPCLYIENTYLVREGDPVDEMLFVIRGRLESVTTDGGRSGFFNRSLLKESDFCGEELLT
WALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRKLHSRQVQHTFRFYSQHW
RTWAACFIQAAWRRFTKRKLMELQRKEDEEAEALAGASSTPGGSPYSIRATFLASRFAAN
ALRGVHRNRNLKTARELMKLQKPPEPDFSEDTE

Transcript Sequence

Gene sequence data has not been registered.